ANNOVAR Tool name | ANNOVAR |
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URL | http://www.openbioinformatics.org/annovar/ |
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Important features | 1. ANNOVAR annotate genetic variants detected from diverse genomes including human genome hg18/ hg19, as well as mouse, worm, fly, yeast and many other organisms.
2. It can perform Gene-based, region-based and filter-based annotations. |
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Citations | Wang K, Li M, Hakonarson H.
ANNOVAR: functional annotation of genetic variants from high throughput sequencing data.
Nucleic Acids Res. 2010 Sep;38(16):e164. Epub 2010 Jul 3.
PMID:20601685. |
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Year of publication | 2010 |
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Rank by usage frequency | 50 |
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Comments | |
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Function | SNP discovery, Indel discovery |
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Category | Free, Downloadable |
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License | |
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Status | |
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Input file format | text-based input files, SAMTools pileup format, Illumina export format from GenomeStudio, SOLiD GFF genotype-calling format, Complete Genomics variant format, and VCF format. |
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Output file format | |
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Operating system | Linux |
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Operating language | Perl |
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Platform | |
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Maintained by | Ellen Purpus, director of OTT
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Downloadable file format | |
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